SNP Profiles of BE 10   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
8._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
9._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
10._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
11._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._BE_10
AAAATTAA____CCCCGG_CC_
13._BE_10
AAAATTAA____CCCCGG_CC_
14._BE_10
AAAATTAA____CCCCGG_CC_
15._BE_10
AAAATTAA____CCCCGG_CC_
16._BE_10
AAAATTAA____CCCCGG_CC_
17._BE_10
AAAATTAA____CCCCGG_CC_
18._BE_10
AAAATTAA____CCCCGG_CC_
19._BE_10
AAAATTAA____CCCCGG_CC_
20._BE_10
AAAATTAA____CCCCGG_CC_
21._BE_10
AAAATTAA____CCCCGG_CC_
22._BE_10
AAAATTAA____CCCCGG_CC_
23._BE_10
AAAATTAA____CCCCGG_CC_
24._BE_10
AA_TTAA____CCCCGG_CC_
25._GC-08-90-2-13
AAAA_AAGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
2._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
3._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
4._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
5._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
6._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
7._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
8._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
9._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
10._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
11._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
12._BE_10
__AA__GG____TTAA_GG
13._BE_10
__AA__GG____TTAA_GG
14._BE_10
__AA__GG____TTAA_GG
15._BE_10
__AA__GG____TTAA_GG
16._BE_10
__AA__GG____TTAA_GG
17._BE_10
__AA__GG____TTAA_GG
18._BE_10
__AA__GG____TTAA_GG
19._BE_10
__AA__GG____TTAA_GG
20._BE_10
__AA__GG____TTAA_GG
21._BE_10
__AA__GG____TTAA_GG
22._BE_10
__AA__GG____TTAA_GG
23._BE_10
__AA__GG____TTAA_GG
24._BE_10
__AA_______TTAA_GG
25._GC-08-90-2-13
TTCCAACC_GGAAGGAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGCCCCGGTTGGTTAATTAACC
1._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
2._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
3._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
4._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
5._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
6._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
7._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
8._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
9._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
10._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
11._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
12._BE_10
AA___CC_GGTT__AA___
13._BE_10
AA___CC_GGTT__AA___
14._BE_10
AA___CC_GGTT__AA___
15._BE_10
AA___CC_GGTT__AA___
16._BE_10
AA___CC_GGTT__AA___
17._BE_10
AA___CC_GGTT__AA___
18._BE_10
AA___CC_GGTT__AA___
19._BE_10
AA___CC_GGTT__AA___
20._BE_10
AA___CC_GGTT__AA___
21._BE_10
AA___CC_GGTT__AA___
22._BE_10
AA___CC_GGTT__AA___
23._BE_10
AA___CC_GGTT__AA___
24._BE_10
AA___CC_GGTT__AA___
25._GC-08-90-2-13
AAAACCGGCCCCGGAACCAAAAAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
1._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
2._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
3._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
4._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
5._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
6._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
7._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
8._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
9._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
10._GC-08-090-2-13
GGTTCCAAGGCCCCGGGGTTTTCCTTTT
11._GC-08-090-2-13
GGTTCC_GGCCCCGGGGTTTT_TTTT
12._BE_10
__CC________CCTT_
13._BE_10
__CC________CCTT_
14._BE_10
__CC________CCTT_
15._BE_10
__CC________CCTT_
16._BE_10
__CC________CCTT_
17._BE_10
__CC________CCTT_
18._BE_10
__CC________CCTT_
19._BE_10
__CC________CCTT_
20._BE_10
__CC________CCTT_
21._BE_10
__CC________CCTT_
22._BE_10
__CC________CCTT_
23._BE_10
__CC_________TT_
24._BE_10
__CC________CCTT_
25._GC-08-90-2-13
CC_GG_GGGG_GGGGAAAAGGAAAA
 5758596061626364656667686970
_Input profile
AACCTTCCAAGGGGCCAATTGGGGTTCC
1._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
2._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
3._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
4._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
5._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
6._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
7._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
8._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
9._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
10._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
11._GC-08-090-2-13
AACCTTCCAAGGGGCCAATTGGGGTTCC
12._BE_10
_CC_CCAAGG_CCAATTGG___
13._BE_10
_CC_CCAAGG_CCAATTGG___
14._BE_10
_CC_CCAAGG_CCAATTGG___
15._BE_10
_CC_CCAAGG_CCAATTGG___
16._BE_10
_CC_CCAAGG_CCAATTGG___
17._BE_10
_CC_CCAAGG_CCAATTGG___
18._BE_10
_CC_CCAAGG_CCAATTGG___
19._BE_10
_CC_CCAAGG_CCAATTGG___
20._BE_10
_CC_CCAAGG_CCAATTGG___
21._BE_10
_CC_CCAAGG_CCAATTGG___
22._BE_10
_CC_CCAAGG_CCAATTGG___
23._BE_10
_CC_CCAAGG_CCAATTGG___
24._BE_10
_CC_CCAAGG_CCAATTGG___
25._GC-08-90-2-13
AAGGAAGGAAGGGGCCAAAACCGG__
 7172737475767778798081828384
_Input profile
GGTTCCAACCAAAACCGGCCTTAATTTT
1._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
2._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
3._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
4._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
5._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
6._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
7._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
8._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
9._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
10._GC-08-090-2-13
GGTTCCAACCAAAACCGGCCTTAATTTT
11._GC-08-090-2-13
GG_CCAACCAAAACCGGCCTTAATTTT
12._BE_10
GGTT_____CCGG___TTTT
13._BE_10
GGTT_____CCGG___TTTT
14._BE_10
GGTT_____CCGG___TTTT
15._BE_10
GGTT_____CCGG___TTTT
16._BE_10
GGTT_____CCGG___TTTT
17._BE_10
GGTT_____CCGG___TTTT
18._BE_10
GGTT_____CCGG___TTTT
19._BE_10
GGTT_____CCGG___TTTT
20._BE_10
GGTT_____CCGG___TTTT
21._BE_10
GGTT_____CCGG___TTTT
22._BE_10
GGTT_____CCGG___TTTT
23._BE_10
GG______CCGG___TTTT
24._BE_10
AA_______GG___TTTT
25._GC-08-90-2-13
_AACCAACCAA_CCCCGGTTAAAAAA
 858687888990919293     
_Input profile
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
9._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
10._GC-08-090-2-13
TTTTAATTCC_TTAAGGX_XX_XX_XX_XX_X
11._GC-08-090-2-13
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
12._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
13._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
14._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
15._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
16._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
17._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
18._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
19._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
20._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
21._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
22._BE_10
TT_AA_CC_TT__X_XX_XX_XX_XX_X
23._BE_10
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
24._BE_10
TT_AA__TT___X_XX_XX_XX_XX_X
25._GC-08-90-2-13
_AA__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: BE_10 GC-08-090-2-13

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

1._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

13._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

16._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

17._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

18._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

19._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

20._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

21._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

22._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

23._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

24._BE_10

97.1 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240